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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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Journal Article

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APIScanner - Towards Automated Detection of Deprecated APIs in Python Libraries

by Vadlamani, Aparna, Kalicheti, Rishitha, Chimalakonda, Sridhar
Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)

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Conference Proceeding

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Development of Software Tools to Improve the Work of the Code Completion Mechanism Using Machine Learning Algorithms in an Integrated Development Environment for Python

Published in Vestnik NSU Series Information Technologies

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Journal Article

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Machine Learning Guide for Oil and Gas Using Python - A Step-by-Step Breakdown with Data, Algorithms, Codes, and Applications

by Belyadi, Hoss, Haghighat, Alireza
Year of Publication 2021

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eBook

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PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins

by Marrama, Daniel, Chronister, William D., Westernberg, Luise, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Sette, Alessandro, Nielsen, Morten, Greenbaum, Jason A., Peters, Bjoern
Published in BMC bioinformatics (18.12.2023)

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Journal Article

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Ab Initio Multiple Spawning Nonadiabatic Dynamics with Different CASPT2 Flavors: A Fully Open-Source PySpawn/OpenMolcas Interface

by Ibele, Lea M., Memhood, Arshad, Levine, Benjamin G., Avagliano, Davide
Published in Journal of chemical theory and computation (04.09.2024)

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Journal Article

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Shooting the Numerical Solution of Moisture Flow Equation with Root Water Uptake Models: A Python Tool

by Difonzo, Fabio V., Masciopinto, Costantino, Vurro, Michele, Berardi, Marco
Published in Water resources management (01.06.2021)

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Journal Article

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PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces

by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)

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Journal Article

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New Python-based methods for data processing

by Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)

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Journal Article

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A conversion tool for translating Python-based machine learning models to structured text codes

by Campos, Yasmin Adriane de Paula, Pereira, Paulo Haron da Silva, Duarte, Robson Aparecido, Perez, José Manuel Gonzalez Túbio, Pessin, Gustavo, Pinto, Thomas Vargas Barsante
Published in SoftwareX (01.02.2025)

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Journal Article

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GSEApy: a comprehensive package for performing gene set enrichment analysis in Python

by Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary
Published in Bioinformatics (Oxford, England) (01.01.2023)

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Journal Article

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p3d – Python module for structural bioinformatics

by Fufezan, Christian, Specht, Michael
Published in BMC bioinformatics (21.08.2009)

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Journal Article

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Bioinformatic pipelines in Python with Leaf

by Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)

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Journal Article

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MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics

by Egea, Jose A, Henriques, David, Cokelaer, Thomas, Villaverde, Alejandro F, MacNamara, Aidan, Danciu, Diana-Patricia, Banga, Julio R, Saez-Rodriguez, Julio
Published in BMC bioinformatics (10.05.2014)

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Journal Article

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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

by Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)

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Journal Article

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A faster circular binary segmentation algorithm for the analysis of array CGH data

by Venkatraman, E. S., Olshen, Adam B.
Published in Bioinformatics (15.03.2007)

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Journal Article

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The k-bin tool: Fast and flexible k-distribution algorithms written in Python

by Madenach, Nils, Preusker, Rene, Docter, Nicole, Jänicke, Lena, Fischer, Jürgen
Published in Journal of quantitative spectroscopy & radiative transfer (01.12.2024)

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Journal Article

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KnotSeeker: Heuristic pseudoknot detection in long RNA sequences

by Sperschneider, Jana, Datta, Amitava
Published in RNA (Cambridge) (01.04.2008)

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Journal Article

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Python tools for structural tasks in chemistry

by Ryzhkov, Fedor V., Ryzhkova, Yuliya E., Elinson, Michail N.
Published in Molecular diversity (01.08.2025)

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Journal Article

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Pytrf: a python package for finding tandem repeats from genomic sequences

by Du, Lianming, Sun, Dalin, Chen, Jiahao, Zhou, Xinyi, Zhao, Kelei, Zeng, Qianglin, Yang, Nan
Published in BMC bioinformatics (04.06.2025)

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Journal Article

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