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PyImageJ: A library for integrating ImageJ and Python
Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Journal Article
Evaluating machine learning algorithms to predict lameness in dairy cattle
Neupane, Rajesh, Aryal, Ashrant, Haeussermann, Angelika, Hartung, Eberhard, Pinedo, Pablo, Paudyal, Sushil
Published in PloS one (18.07.2024)
Published in PloS one (18.07.2024)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
PyRates—A Python framework for rate-based neural simulations
Gast, Richard, Rose, Daniel, Salomon, Christoph, Möller, Harald E., Weiskopf, Nikolaus, Knösche, Thomas R.
Published in PloS one (16.12.2019)
Published in PloS one (16.12.2019)
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Journal Article
Natural language processing augments comorbidity documentation in neurosurgical inpatient admissions
Sastry, Rahul A., Setty, Aayush, Liu, David D., Zheng, Bryan, Ali, Rohaid, Weil, Robert J., Roye, G. Dean, Doberstein, Curtis E., Oyelese, Adetokunbo A., Niu, Tianyi, Gokaslan, Ziya L., Telfeian, Albert E.
Published in PloS one (09.05.2024)
Published in PloS one (09.05.2024)
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Journal Article
Morphoscanner2.0: A new python module for analysis of molecular dynamics simulations
Fontana, Federico, Carlino, Calogero, Malik, Ashish, Gelain, Fabrizio
Published in PloS one (27.04.2023)
Published in PloS one (27.04.2023)
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Journal Article
A predictive model for recurrence in patients with borderline ovarian tumor based on neural multi-task logistic regression
Ye, Qiulin, Qi, Yue, Liu, Juanjuan, Hu, Yuexin, Li, Xiao, Guo, Qian, Zhang, Danye, Lin, Bei
Published in BMC cancer (17.02.2025)
Published in BMC cancer (17.02.2025)
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Journal Article
Prediction of stunting and its socioeconomic determinants among adolescent girls in Ethiopia using machine learning algorithms
Zemariam, Alemu Birara, Abate, Biruk Beletew, Alamaw, Addis Wondmagegn, Lake, Eyob shitie, Yilak, Gizachew, Ayele, Mulat, Tilahun, Befkad Derese, Ngusie, Habtamu Setegn
Published in PloS one (24.01.2025)
Published in PloS one (24.01.2025)
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Journal Article
GLAMbox: A Python toolbox for investigating the association between gaze allocation and decision behaviour
Molter, Felix, Thomas, Armin W, Heekeren, Hauke R, Mohr, Peter N. C
Published in PloS one (16.12.2019)
Published in PloS one (16.12.2019)
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Journal Article
Screening for Parkinson’s disease using “computer vision”
Kasemsap, Narongrit, Tikkapanyo, Purinat, Wanjantuk, Panupong, Vorasoot, Nisa, Kongbunkiat, Kannikar, Panitchote, Anupol
Published in PloS one (12.08.2025)
Published in PloS one (12.08.2025)
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Journal Article
VMseg: Using spatial variance to automatically segment retinal non-perfusion on OCT-angiography
LE BOITE, Hugo, COUTURIER, Aude, TADAYONI, Ramin, LAMARD, Mathieu, QUELLEC, Gwenolé
Published in PloS one (07.08.2024)
Published in PloS one (07.08.2024)
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Journal Article
FORCETRACKER: A versatile tool for standardized assessment of tissue contractile properties in 3D Heart-on-Chip platforms
Rivera-Arbeláez, José M, Dostanić, Milica, Windt, Laura M, Stein, Jeroen M, Cofiño-Fabres, Carla, Boonen, Tom, Wiendels, Maury, van den Berg, Albert, Segerink, Loes I, Mummery, Christine L, Sarro, Pasqualina M, van Meer, Berend J, Ribeiro, Marcelo C, Mastrangeli, Massimo, Passier, Robert
Published in PloS one (13.02.2025)
Published in PloS one (13.02.2025)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article