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Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm
Zunder, Eli R, Finck, Rachel, Behbehani, Gregory K, Amir, El-ad D, Krishnaswamy, Smita, Gonzalez, Veronica D, Lorang, Cynthia G, Bjornson, Zach, Spitzer, Matthew H, Bodenmiller, Bernd, Fantl, Wendy J, Pe'er, Dana, Nolan, Garry P
Published in Nature protocols (01.02.2015)
Published in Nature protocols (01.02.2015)
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Journal Article
Analysis of high density expression microarrays with signed-rank call algorithms
Liu, W.-m, Mei, R., Di, X., Ryder, T. B., Hubbell, E., Dee, S., Webster, T. A., Harrington, C. A., Ho, M.-h., Baid, J., Smeekens, S. P.
Published in Bioinformatics (Oxford, England) (01.12.2002)
Published in Bioinformatics (Oxford, England) (01.12.2002)
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Journal Article
Novel genotyping algorithms for rare variants significantly improve the accuracy of Applied Biosystems™ Axiom™ array genotyping calls: Retrospective evaluation of UK Biobank array data
Mizrahi-Man, Orna, Woehrmann, Marcos H., Webster, Teresa A., Gollub, Jeremy, Bivol, Adrian, Keeble, Sara M., Aull, Katherine H., Mittal, Anuradha, Roter, Alan H., Wong, Brant A., Schmidt, Jeanette P.
Published in PloS one (17.11.2022)
Published in PloS one (17.11.2022)
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Journal Article
A robust clustering algorithm for identifying problematic samples in genome-wide association studies
Bellenguez, Céline, Strange, Amy, Freeman, Colin, Donnelly, Peter, Spencer, Chris C.A.
Published in Bioinformatics (01.01.2012)
Published in Bioinformatics (01.01.2012)
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Journal Article
A high-performance neural prosthesis enabled by control algorithm design
Gilja, Vikash, Nuyujukian, Paul, Chestek, Cindy A, Cunningham, John P, Yu, Byron M, Fan, Joline M, Churchland, Mark M, Kaufman, Matthew T, Kao, Jonathan C, Ryu, Stephen I, Shenoy, Krishna V
Published in Nature neuroscience (01.12.2012)
Published in Nature neuroscience (01.12.2012)
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Journal Article
FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets
Ko, Melissa E., Williams, Corey M., Fread, Kristen I., Goggin, Sarah M., Rustagi, Rohit S., Fragiadakis, Gabriela K., Nolan, Garry P., Zunder, Eli R.
Published in Nature protocols (01.02.2020)
Published in Nature protocols (01.02.2020)
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Journal Article
Comprehensive Assessment and Standardization of Solid Phase Multiplex‐Bead Arrays for the Detection of Antibodies to HLA
Reed, E. F., Rao, P., Zhang, Z., Gebel, H., Bray, R. A., Guleria, I., Lunz, J., Mohanakumar, T., Nickerson, P., Tambur, A. R., Zeevi, A., Heeger, P. S., Gjertson, D.
Published in American journal of transplantation (01.07.2013)
Published in American journal of transplantation (01.07.2013)
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Journal Article
Rank Properties of Manifold Matrices of Sparse Arrays
Chen, Po-Chih, Vaidyanathan, P. P.
Published in Conference record - Asilomar Conference on Signals, Systems, & Computers (31.10.2021)
Published in Conference record - Asilomar Conference on Signals, Systems, & Computers (31.10.2021)
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Conference Proceeding
Prognostically Useful Gene-Expression Profiles in Acute Myeloid Leukemia
Valk, Peter J.M, Verhaak, Roel G.W, Beijen, M. Antoinette, Erpelinck, Claudia A.J, van Doorn-Khosrovani, Sahar Barjesteh van Waalwijk, Boer, Judith M, Beverloo, H. Berna, Moorhouse, Michael J, van der Spek, Peter J, Löwenberg, Bob, Delwel, Ruud
Published in The New England journal of medicine (15.04.2004)
Published in The New England journal of medicine (15.04.2004)
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Journal Article
Hydrogel-Forming Microneedle Arrays Allow Detection of Drugs and Glucose In Vivo: Potential for Use in Diagnosis and Therapeutic Drug Monitoring
Caffarel-Salvador, Ester, Brady, Aaron J., Eltayib, Eyman, Meng, Teng, Alonso-Vicente, Ana, Gonzalez-Vazquez, Patricia, Torrisi, Barbara M., Vicente-Perez, Eva Maria, Mooney, Karen, Jones, David S., Bell, Steven E. J., McCoy, Colin P., McCarthy, Helen O., McElnay, James C., Donnelly, Ryan F.
Published in PloS one (30.12.2015)
Published in PloS one (30.12.2015)
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Journal Article
FIRMA: a method for detection of alternative splicing from exon array data
Purdom, E., Simpson, K. M., Robinson, M. D., Conboy, J. G., Lapuk, A. V., Speed, T.P.
Published in Bioinformatics (01.08.2008)
Published in Bioinformatics (01.08.2008)
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Journal Article
Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second
Zhou, Kevin C., Harfouche, Mark, Cooke, Colin L., Park, Jaehee, Konda, Pavan C., Kreiss, Lucas, Kim, Kanghyun, Jönsson, Joakim, Doman, Thomas, Reamey, Paul, Saliu, Veton, Cook, Clare B., Zheng, Maxwell, Bechtel, John P., Bègue, Aurélien, McCarroll, Matthew, Bagwell, Jennifer, Horstmeyer, Gregor, Bagnat, Michel, Horstmeyer, Roarke
Published in Nature photonics (01.05.2023)
Published in Nature photonics (01.05.2023)
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Journal Article
Genetic Algorithms in Antennas and Smart Antennas Design Overview: Two Novel Antenna Systems for Triband GNSS Applications and a Circular Switched Parasitic Array for WiMax Applications Developments with the Use of Genetic Algorithms
Panagiotou, Stylianos C., Capsalis, Christos N., Thomopoulos, Stelios C. A.
Published in International journal of antennas and propagation (01.01.2014)
Published in International journal of antennas and propagation (01.01.2014)
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Journal Article
The MMSE Algorithm and Mutual Coupling for Adaptive Arrays
Zhiyong Huang, Balanis, C.A.
Published in IEEE transactions on antennas and propagation (01.05.2008)
Published in IEEE transactions on antennas and propagation (01.05.2008)
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Journal Article
Gene selection and clustering for time-course and dose–response microarray experiments using order-restricted inference
Peddada, Shyamal D., Lobenhofer, Edward K., Li, Leping, Afshari, Cynthia A., Weinberg, Clarice R., Umbach, David M.
Published in Bioinformatics (Oxford, England) (01.05.2003)
Published in Bioinformatics (Oxford, England) (01.05.2003)
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Journal Article
QFlow lite dataset: A machine-learning approach to the charge states in quantum dot experiments
Zwolak, Justyna P., Kalantre, Sandesh S., Wu, Xingyao, Ragole, Stephen, Taylor, Jacob M.
Published in PloS one (17.10.2018)
Published in PloS one (17.10.2018)
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Journal Article
ROBOT: A Tool for Automating Ontology Workflows
Jackson, Rebecca C., Balhoff, James P., Douglass, Eric, Harris, Nomi L., Mungall, Christopher J., Overton, James A.
Published in BMC bioinformatics (29.07.2019)
Published in BMC bioinformatics (29.07.2019)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article