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Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm
Zunder, Eli R, Finck, Rachel, Behbehani, Gregory K, Amir, El-ad D, Krishnaswamy, Smita, Gonzalez, Veronica D, Lorang, Cynthia G, Bjornson, Zach, Spitzer, Matthew H, Bodenmiller, Bernd, Fantl, Wendy J, Pe'er, Dana, Nolan, Garry P
Published in Nature protocols (01.02.2015)
Published in Nature protocols (01.02.2015)
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Journal Article
A high-performance neural prosthesis enabled by control algorithm design
Gilja, Vikash, Nuyujukian, Paul, Chestek, Cindy A, Cunningham, John P, Yu, Byron M, Fan, Joline M, Churchland, Mark M, Kaufman, Matthew T, Kao, Jonathan C, Ryu, Stephen I, Shenoy, Krishna V
Published in Nature neuroscience (01.12.2012)
Published in Nature neuroscience (01.12.2012)
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Journal Article
FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets
Ko, Melissa E., Williams, Corey M., Fread, Kristen I., Goggin, Sarah M., Rustagi, Rohit S., Fragiadakis, Gabriela K., Nolan, Garry P., Zunder, Eli R.
Published in Nature protocols (01.02.2020)
Published in Nature protocols (01.02.2020)
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Journal Article
Prognostically Useful Gene-Expression Profiles in Acute Myeloid Leukemia
Valk, Peter J.M, Verhaak, Roel G.W, Beijen, M. Antoinette, Erpelinck, Claudia A.J, van Doorn-Khosrovani, Sahar Barjesteh van Waalwijk, Boer, Judith M, Beverloo, H. Berna, Moorhouse, Michael J, van der Spek, Peter J, Löwenberg, Bob, Delwel, Ruud
Published in The New England journal of medicine (15.04.2004)
Published in The New England journal of medicine (15.04.2004)
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Journal Article
Hydrogel-Forming Microneedle Arrays Allow Detection of Drugs and Glucose In Vivo: Potential for Use in Diagnosis and Therapeutic Drug Monitoring
Caffarel-Salvador, Ester, Brady, Aaron J., Eltayib, Eyman, Meng, Teng, Alonso-Vicente, Ana, Gonzalez-Vazquez, Patricia, Torrisi, Barbara M., Vicente-Perez, Eva Maria, Mooney, Karen, Jones, David S., Bell, Steven E. J., McCoy, Colin P., McCarthy, Helen O., McElnay, James C., Donnelly, Ryan F.
Published in PloS one (30.12.2015)
Published in PloS one (30.12.2015)
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Journal Article
FIRMA: a method for detection of alternative splicing from exon array data
Purdom, E., Simpson, K. M., Robinson, M. D., Conboy, J. G., Lapuk, A. V., Speed, T.P.
Published in Bioinformatics (01.08.2008)
Published in Bioinformatics (01.08.2008)
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Journal Article
Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second
Zhou, Kevin C., Harfouche, Mark, Cooke, Colin L., Park, Jaehee, Konda, Pavan C., Kreiss, Lucas, Kim, Kanghyun, Jönsson, Joakim, Doman, Thomas, Reamey, Paul, Saliu, Veton, Cook, Clare B., Zheng, Maxwell, Bechtel, John P., Bègue, Aurélien, McCarroll, Matthew, Bagwell, Jennifer, Horstmeyer, Gregor, Bagnat, Michel, Horstmeyer, Roarke
Published in Nature photonics (01.05.2023)
Published in Nature photonics (01.05.2023)
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Journal Article
QFlow lite dataset: A machine-learning approach to the charge states in quantum dot experiments
Zwolak, Justyna P., Kalantre, Sandesh S., Wu, Xingyao, Ragole, Stephen, Taylor, Jacob M.
Published in PloS one (17.10.2018)
Published in PloS one (17.10.2018)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Bacterial genome engineering using CRISPR-associated transposases
Gelsinger, Diego Rivera, Vo, Phuc Leo H., Klompe, Sanne E., Ronda, Carlotta, Wang, Harris H., Sternberg, Samuel H.
Published in Nature protocols (01.03.2024)
Published in Nature protocols (01.03.2024)
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Journal Article
Effect of Matching Algorithm and Profile Shape on Pulsar Pulse Time of Arrival Uncertainties
Wang, J., Verbiest, J. P. W., Shaifullah, G. M., Yuan, J. P.
Published in Research in astronomy and astrophysics (01.12.2023)
Published in Research in astronomy and astrophysics (01.12.2023)
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Journal Article
Rank Properties of Manifold Matrices of Sparse Arrays
Chen, Po-Chih, Vaidyanathan, P. P.
Published in Conference record - Asilomar Conference on Signals, Systems, & Computers (31.10.2021)
Published in Conference record - Asilomar Conference on Signals, Systems, & Computers (31.10.2021)
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Conference Proceeding
A Meta-Analysis of Retinoblastoma Copy Numbers Refines the List of Possible Driver Genes Involved in Tumor Progression
Kooi, Irsan E., Mol, Berber M., Massink, Maarten P. G., de Jong, Marcus C., de Graaf, Pim, van der Valk, Paul, Meijers-Heijboer, Hanne, Kaspers, Gertjan J. L., Moll, Annette C., te Riele, Hein, Cloos, Jacqueline, Dorsman, Josephine C.
Published in PloS one (26.04.2016)
Published in PloS one (26.04.2016)
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Journal Article
Integration of microarray data and literature mining identifies a sex bias in DPP4+CD4+ T cells in HIV-1 infection
Stubbe, Hans Christian, Dahlke, Christine, Rotheneder, Katharina, Stirner, Renate, Roider, Julia, Conca, Raffaele, Seybold, Ulrich, Bogner, Johannes, Addo, Marylyn Martina, Draenert, Rika
Published in PloS one (18.09.2020)
Published in PloS one (18.09.2020)
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Journal Article
Increasing the diagnostic yield of exome sequencing by copy number variant analysis
Marchuk, Daniel S., Crooks, Kristy, Strande, Natasha, Kaiser-Rogers, Kathleen, Milko, Laura V., Brandt, Alicia, Arreola, Alexandra, Tilley, Christian R., Bizon, Chris, Vora, Neeta L., Wilhelmsen, Kirk C., Evans, James P., Berg, Jonathan S.
Published in PloS one (17.12.2018)
Published in PloS one (17.12.2018)
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Journal Article
Definitions, methods, and applications in interpretable machine learning
Murdoch, W. James, Singh, Chandan, Kumbier, Karl, Abbasi-Asl, Reza, Yu, Bin
Published in Proceedings of the National Academy of Sciences - PNAS (29.10.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (29.10.2019)
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Journal Article
Gene Expression during the Life Cycle of Drosophila melanogaster
Arbeitman, Michelle N., Eileen E. M. Furlong, Imam, Farhad, Johnson, Eric, Null, Brian H., Baker, Bruce S., Krasnow, Mark A., Scott, Matthew P., Davis, Ronald W., White, Kevin P.
Published in Science (American Association for the Advancement of Science) (27.09.2002)
Published in Science (American Association for the Advancement of Science) (27.09.2002)
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Journal Article