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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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Python - An Introduction to Programming (2nd Edition)

by Parker, James R
Year of Publication 2021

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eBook

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Data mining techniques on astronomical spectra data – II. Classification analysis

by Yang, Haifeng, Zhou, Lichan, Cai, Jianghui, Shi, Chenhui, Yang, Yuqing, Zhao, Xujun, Duan, Juncheng, Yin, Xiaona
Published in Monthly notices of the Royal Astronomical Society (01.02.2023)

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

by Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)

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MEG and EEG data analysis with MNE-Python

by Gramfort, Alexandre
Published in Frontiers in neuroscience (26.12.2013)

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Improved Petrophysical Property Evaluation of Shaly Sand Reservoirs Using Modified Grey Wolf Intelligence Algorithm

by Jia, Bao, Xian, Chenggang, Jia, Wenfeng, Su, Jianzheng
Published in Computational geosciences (01.08.2023)

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MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics

by Haiman, Zachary B., Zielinski, Daniel C., Koike, Yuko, Yurkovich, James T., Palsson, Bernhard O.
Published in PLoS computational biology (28.01.2021)

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Leveraging Quadratic Polynomials in Python for Advanced Data Analysis [version 2; peer review: 2 approved with reservations]

by Sipakov, Rostyslav, Voloshkina, Olena, Kovalova, Anastasiia
Published in F1000 research (2024)

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Value trace problems with assisting references for Python programming self-study

by Hay Mar Shwe, San Hay Mar, Funabiki, Nobuo, Syaifudin, Yan Watequlis, Tar, Phyu Phyu, Kyaw, Htoo Htoo Sandi, Thant, Hnin Aye, Kao, Wen-Chung, Min, Nandar Win, Myint, Thandar, Htet, Ei Ei
Published in International journal of Web information systems (06.09.2021)

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PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins

by Marrama, Daniel, Chronister, William D., Westernberg, Luise, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Sette, Alessandro, Nielsen, Morten, Greenbaum, Jason A., Peters, Bjoern
Published in BMC bioinformatics (18.12.2023)

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A fast algorithm for automatic phase picker and event location: Application to the 2018 Hualien earthquake sequences

by Chang, Yu-Hsuan, Hung, Shu-Huei, Chen, Yen-Ling
Published in TAO : Terrestrial, atmospheric, and oceanic sciences (01.06.2019)

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PyGeNN: A Python Library for GPU-Enhanced Neural Networks

by Knight, James C., Komissarov, Anton, Nowotny, Thomas
Published in Frontiers in neuroinformatics (22.04.2021)

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PyRates—A code-generation tool for modeling dynamical systems in biology and beyond

by Gast, Richard, Knösche, Thomas R., Kennedy, Ann
Published in PLoS computational biology (27.12.2023)

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2FAST2Q: a general-purpose sequence search and counting program for FASTQ files

by Bravo, Afonso M., Typas, Athanasios, Veening, Jan-Willem
Published in PeerJ (San Francisco, CA) (25.10.2022)

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Predicting tuberculosis drug properties using extended energy based topological indices via a python driven QSPR approach

by Naz, Kiran, Bilal, Hafiz Muhammad, Siddiqui, Muhammad Kamran, Ahmad, Sarfraz, Ali, Mustafa Ahmed
Published in Scientific reports (05.05.2025)

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5 Hands-on 3: Introduction to developing Python computational pipelines for predictive machine learning modelling of livestock data

by Tulpan, Dan
Published in Journal of animal science (14.09.2024)

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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support

by Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)

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jrfapp: A Python Package for Joint Inversion of Apparent S-Wave Velocity and Receiver Function Time Series

by Veisi, Mohammad, Motaghi, Khalil, Schiffer, Christian
Published in Pure and applied geophysics (01.01.2024)

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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data

by Lachance, Jean-Christophe, Lloyd, Colton J., Monk, Jonathan M., Yang, Laurence, Sastry, Anand V., Seif, Yara, Palsson, Bernhard O., Rodrigue, Sébastien, Feist, Adam M., King, Zachary A., Jacques, Pierre-Étienne
Published in PLoS computational biology (01.04.2019)

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GeNePy3D: a quantitative geometry python toolbox for bioimaging [version 2; peer review: 2 approved]

by Phan, Minh-Son, Chessel, Anatole
Published in F1000 research (2020)

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