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COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)
Published in BMC systems biology (08.08.2013)
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Journal Article
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
Ghurye, Jay, Rhie, Arang, Walenz, Brian P., Schmitt, Anthony, Selvaraj, Siddarth, Pop, Mihai, Phillippy, Adam M., Koren, Sergey
Published in PLoS computational biology (01.08.2019)
Published in PLoS computational biology (01.08.2019)
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Journal Article
scTPC: a novel semisupervised deep clustering model for scRNA-seq data
Qiu, Yushan, Yang, Lingfei, Jiang, Hao, Zou, Quan
Published in Bioinformatics (Oxford, England) (02.05.2024)
Published in Bioinformatics (Oxford, England) (02.05.2024)
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Journal Article
New Python-based methods for data processing
Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
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Journal Article
PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)
Published in PloS one (06.08.2025)
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Journal Article
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Pinto, Dalila, Darvishi, Katayoon, Shi, Xinghua, Rajan, Diana, Rigler, Diane, Fitzgerald, Tom, Lionel, Anath C, Thiruvahindrapuram, Bhooma, MacDonald, Jeffrey R, Mills, Ryan, Prasad, Aparna, Noonan, Kristin, Gribble, Susan, Prigmore, Elena, Donahoe, Patricia K, Smith, Richard S, Park, Ji Hyeon, Hurles, Matthew E, Carter, Nigel P, Lee, Charles, Scherer, Stephen W, Feuk, Lars
Published in Nature biotechnology (01.06.2011)
Published in Nature biotechnology (01.06.2011)
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Journal Article
Increasing tendency of urine protein is a risk factor for rapid eGFR decline in patients with CKD: A machine learning-based prediction model by using a big database
Inaguma, Daijo, Kitagawa, Akimitsu, Yanagiya, Ryosuke, Koseki, Akira, Iwamori, Toshiya, Kudo, Michiharu, Yuzawa, Yukio
Published in PLoS ONE (17.09.2020)
Published in PLoS ONE (17.09.2020)
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Journal Article
The eMERGE Network: A consortium of biorepositories linked to electronic medical records data for conducting genomic studies
McCarty, Catherine A, Chisholm, Rex L, Chute, Christopher G, Kullo, Iftikhar J, Jarvik, Gail P, Larson, Eric B, Li, Rongling, Masys, Daniel R, Ritchie, Marylyn D, Roden, Dan M, Struewing, Jeffery P, Wolf, Wendy A
Published in BMC genomics (26.01.2011)
Published in BMC genomics (26.01.2011)
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Journal Article
Evaluation of six machine learning classification algorithms in pig breed identification using SNPs array data
Liu, Ruiqi, Xu, Zhiting, Teng, Jinyan, Pan, Xiangchun, Lin, Qing, Cai, Xiaodian, Diao, Shuqi, Feng, Xueyan, Yuan, Xiaolong, Li, Jiaqi, Zhang, Zhe
Published in Animal genetics (01.04.2023)
Published in Animal genetics (01.04.2023)
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Journal Article
An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray
Salas, Lucas A., Koestler, Devin C., Butler, Rondi A., Hansen, Helen M., Wiencke, John K., Kelsey, Karl T., Christensen, Brock C.
Published in Genome Biology (29.05.2018)
Published in Genome Biology (29.05.2018)
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Journal Article
GraphPyRec: A novel graph-based approach for fine-grained Python code recommendation
Zong, Xing, Zheng, Shang, Zou, Haitao, Yu, Hualong, Gao, Shang
Published in Science of computer programming (01.12.2024)
Published in Science of computer programming (01.12.2024)
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Journal Article