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MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow
Huang, Sitao, Wu, Kun, Jeong, Hyunmin, Wang, Chengyue, Chen, Deming, Hwu, Wen-Mei
Published in IEEE transactions on computers (01.12.2021)
Published in IEEE transactions on computers (01.12.2021)
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Journal Article
PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)
Published in PloS one (06.08.2025)
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Journal Article
pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)
Published in BMC bioinformatics (07.12.2023)
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Journal Article
Bridging Python to Silicon: The SODA Toolchain
Agostini, Nicolas Bohm, Curzel, Serena, Zhang, Jeff Jun, Limaye, Ankur, Tan, Cheng, Amatya, Vinay, Minutoli, Marco, Castellana, Vito Giovanni, Manzano, Joseph, Brooks, David, Wei, Gu-Yeon, Tumeo, Antonino
Published in IEEE MICRO (01.09.2022)
Published in IEEE MICRO (01.09.2022)
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Journal Article
Pytrf: a python package for finding tandem repeats from genomic sequences
Du, Lianming, Sun, Dalin, Chen, Jiahao, Zhou, Xinyi, Zhao, Kelei, Zeng, Qianglin, Yang, Nan
Published in BMC bioinformatics (04.06.2025)
Published in BMC bioinformatics (04.06.2025)
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Journal Article
An Introduction to Programming for Bioscientists: A Python-Based Primer
Ekmekci, Berk, McAnany, Charles E., Mura, Cameron
Published in PLoS computational biology (01.06.2016)
Published in PLoS computational biology (01.06.2016)
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Journal Article
Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data
ElAbd, Hesham, Degenhardt, Frauke, Koudelka, Tomas, Kamps, Ann-Kristin, Tholey, Andreas, Bacher, Petra, Lenz, Tobias L., Franke, Andre, Wendorff, Mareike
Published in BMC bioinformatics (17.08.2021)
Published in BMC bioinformatics (17.08.2021)
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Journal Article
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Pinto, Dalila, Darvishi, Katayoon, Shi, Xinghua, Rajan, Diana, Rigler, Diane, Fitzgerald, Tom, Lionel, Anath C, Thiruvahindrapuram, Bhooma, MacDonald, Jeffrey R, Mills, Ryan, Prasad, Aparna, Noonan, Kristin, Gribble, Susan, Prigmore, Elena, Donahoe, Patricia K, Smith, Richard S, Park, Ji Hyeon, Hurles, Matthew E, Carter, Nigel P, Lee, Charles, Scherer, Stephen W, Feuk, Lars
Published in Nature biotechnology (01.06.2011)
Published in Nature biotechnology (01.06.2011)
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Journal Article
New Python-based methods for data processing
Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
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Journal Article
Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS
Vieira, Ivo Henrique Provensi, Botelho, Eduardo Buganemi, de Souza Gomes, Thales Junior, Kist, Roger, Caceres, Rafael Andrade, Zanchi, Fernando Berton
Published in BMC bioinformatics (22.03.2023)
Published in BMC bioinformatics (22.03.2023)
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Journal Article
gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Journal Article
Parallel distributed computing using Python
Dalcin, Lisandro D., Paz, Rodrigo R., Kler, Pablo A., Cosimo, Alejandro
Published in Advances in water resources (01.09.2011)
Published in Advances in water resources (01.09.2011)
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Journal Article
A full-fledged micromagnetic code in fewer than 70 lines of NumPy
Abert, Claas, Bruckner, Florian, Vogler, Christoph, Windl, Roman, Thanhoffer, Raphael, Suess, Dieter
Published in Journal of magnetism and magnetic materials (01.08.2015)
Published in Journal of magnetism and magnetic materials (01.08.2015)
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Journal Article