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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces

by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)

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Bioinformatic pipelines in Python with Leaf

by Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)

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PHOTONAI—A Python API for rapid machine learning model development

by Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim
Published in PloS one (21.07.2021)

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Innovative UAV LiDAR Generated Point-Cloud Processing Algorithm in Python for Unsupervised Detection and Analysis of Agricultural Field-Plots

by Polák, Michal, Miřijovský, Jakub, Hernándiz, Alba E., Špíšek, Zdeněk, Koprna, Radoslav, Humplík, Jan F.
Published in Remote sensing (Basel, Switzerland) (10.08.2021)

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FalseColor-Python: A rapid intensity-leveling and digital-staining package for fluorescence-based slide-free digital pathology

by Serafin, Robert, Xie, Weisi, Glaser, Adam K., Liu, Jonathan T. C.
Published in PloS one (01.10.2020)

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Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3

by Bredesen-Aa, Bjørn André, Rehmsmeier, Marc
Published in PloS one (09.09.2022)

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Improved Petrophysical Property Evaluation of Shaly Sand Reservoirs Using Modified Grey Wolf Intelligence Algorithm

by Jia, Bao, Xian, Chenggang, Jia, Wenfeng, Su, Jianzheng
Published in Computational geosciences (01.08.2023)

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2FAST2Q: a general-purpose sequence search and counting program for FASTQ files

by Bravo, Afonso M., Typas, Athanasios, Veening, Jan-Willem
Published in PeerJ (San Francisco, CA) (25.10.2022)

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MultilayerPy (v1.0): a Python-based framework for building, running and optimising kinetic multi-layer models of aerosols and films

by Milsom, Adam, Lees, Amy, Squires, Adam M., Pfrang, Christian
Published in Geoscientific Model Development (22.09.2022)

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OTSun, a python package for the optical analysis of solar-thermal collectors and photovoltaic cells with arbitrary geometry

by Cardona, Gabriel, Pujol-Nadal, Ramon
Published in PloS one (14.10.2020)

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GenProgJS: A Baseline System for Test-Based Automated Repair of JavaScript Programs

by Csuvik, Viktor, Horvath, Daniel, Lajko, Mark, Vidacs, Laszlo
Published in IEEE transactions on software engineering (01.02.2025)

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MEG and EEG data analysis with MNE-Python

by Gramfort, Alexandre
Published in Frontiers in neuroscience (26.12.2013)

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astrophot: fitting everything everywhere all at once in astronomical images

by Stone, Connor J, Courteau, Stéphane, Cuillandre, Jean-Charles, Hezaveh, Yashar, Perreault-Levasseur, Laurence, Arora, Nikhil
Published in Monthly notices of the Royal Astronomical Society (01.11.2023)

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New Python-based methods for data processing

by Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)

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Accelerated linear algebra compiler for computationally efficient numerical models: Success and potential area of improvement

by He, Xuzhen
Published in PloS one (24.02.2023)

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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support

by Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)

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PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins

by Marrama, Daniel, Chronister, William D., Westernberg, Luise, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Sette, Alessandro, Nielsen, Morten, Greenbaum, Jason A., Peters, Bjoern
Published in BMC bioinformatics (18.12.2023)

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ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data

by Zagordi, Osvaldo, Bhattacharya, Arnab, Eriksson, Nicholas, Beerenwinkel, Niko
Published in BMC bioinformatics (26.04.2011)

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

by Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)

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