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    PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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              Journal Article
          
              
          SciKit Digital Health: Python Package for Streamlined Wearable Inertial Sensor Data Processing
                                      
                                            Adamowicz, Lukas,                              Christakis, Yiorgos,                              Czech, Matthew D,                              Adamusiak, Tomasz                              
Published in JMIR mHealth and uHealth (21.04.2022)
                   
      
      
                                                  Published in JMIR mHealth and uHealth (21.04.2022)
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              Journal Article
          
              
          Comparative Analysis of AI Models for Python Code Generation: A HumanEval Benchmark Study
                                      
                                            Bayram, Ali,                              Menekse Dalveren, Gonca Gokce,                              Derawi, Mohammad                              
Published in Applied sciences (10.09.2025)
                   
      
      
                                                  Published in Applied sciences (10.09.2025)
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              Journal Article
          
              
          Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison
                                      
                                            Kuijpers, Lucas,                              Hornung, Bastian,                              van den Hout - van Vroonhoven, Mirjam C. G. N.,                              van IJcken, Wilfred F. J.,                              Grosveld, Frank,                              Mulugeta, Eskeatnaf                              
Published in BMC genomics (12.04.2024)
                   
      
      
                                                  Published in BMC genomics (12.04.2024)
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              Journal Article
          
              
          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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              Journal Article
          
              
          pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library
                                      
                                            Röst, Hannes L.,                              Schmitt, Uwe,                              Aebersold, Ruedi,                              Malmström, Lars                              
Published in Proteomics (Weinheim) (01.01.2014)
                   
      
      
                                                  Published in Proteomics (Weinheim) (01.01.2014)
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              Journal Article
          
              
          Domain Knowledge Matters: Improving Prompts with Fix Templates for Repairing Python Type Errors
                                      
                                            Peng, Yun,                              Gao, Shuzheng,                              Gao, Cuiyun,                              Huo, Yintong,                              Lyu, Michael R.                              
Published in Proceedings / International Conference on Software Engineering (14.04.2024)
                   
      
      
                                                  Published in Proceedings / International Conference on Software Engineering (14.04.2024)
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              Conference Proceeding
          
              
          GSEApy: a comprehensive package for performing gene set enrichment analysis in Python
                                      
                                            Fang, Zhuoqing,                              Liu, Xinyuan,                              Peltz, Gary                              
Published in Bioinformatics (Oxford, England) (01.01.2023)
                   
      
      
                                                  Published in Bioinformatics (Oxford, England) (01.01.2023)
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          BioCoder: a benchmark for bioinformatics code generation with large language models
                                      
                                            Tang, Xiangru,                              Qian, Bill,                              Gao, Rick,                              Chen, Jiakang,                              Chen, Xinyun,                              Gerstein, Mark B                              
Published in Bioinformatics (Oxford, England) (28.06.2024)
                   
      
      
                                                  Published in Bioinformatics (Oxford, England) (28.06.2024)
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              Journal Article
          
              
          MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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          PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow
                                      
                                            Huang, Sitao,                              Wu, Kun,                              Jeong, Hyunmin,                              Wang, Chengyue,                              Chen, Deming,                              Hwu, Wen-Mei                              
Published in IEEE transactions on computers (01.12.2021)
                   
      
      
                                                  Published in IEEE transactions on computers (01.12.2021)
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              Journal Article
          
              
          CoastSat: A Google Earth Engine-enabled Python toolkit to extract shorelines from publicly available satellite imagery
                                      
                                            Vos, Kilian,                              Splinter, Kristen D.,                              Harley, Mitchell D.,                              Simmons, Joshua A.,                              Turner, Ian L.                              
Published in Environmental modelling & software : with environment data news (01.12.2019)
                   
      
      
                                                  Published in Environmental modelling & software : with environment data news (01.12.2019)
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              Journal Article
          
              
          PHOTONAI—A Python API for rapid machine learning model development
                                      
                                            Leenings, Ramona,                              Winter, Nils Ralf,                              Plagwitz, Lucas,                              Holstein, Vincent,                              Ernsting, Jan,                              Sarink, Kelvin,                              Fisch, Lukas,                              Steenweg, Jakob,                              Kleine-Vennekate, Leon,                              Gebker, Julian,                              Emden, Daniel,                              Grotegerd, Dominik,                              Opel, Nils,                              Risse, Benjamin,                              Jiang, Xiaoyi,                              Dannlowski, Udo,                              Hahn, Tim                              
Published in PloS one (21.07.2021)
                   
      
      
                                                  Published in PloS one (21.07.2021)
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              Journal Article