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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
QuOCS: The quantum optimal control suite
Rossignolo, Marco, Reisser, Thomas, Marshall, Alastair, Rembold, Phila, Pagano, Alice, Vetter, Philipp J., Said, Ressa S., Müller, Matthias M., Motzoi, Felix, Calarco, Tommaso, Jelezko, Fedor, Montangero, Simone
Published in Computer physics communications (01.10.2023)
Published in Computer physics communications (01.10.2023)
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Journal Article
GLAMbox: A Python toolbox for investigating the association between gaze allocation and decision behaviour
Molter, Felix, Thomas, Armin W, Heekeren, Hauke R, Mohr, Peter N. C
Published in PloS one (16.12.2019)
Published in PloS one (16.12.2019)
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Journal Article
Prediction of stunting and its socioeconomic determinants among adolescent girls in Ethiopia using machine learning algorithms
Zemariam, Alemu Birara, Abate, Biruk Beletew, Alamaw, Addis Wondmagegn, Lake, Eyob shitie, Yilak, Gizachew, Ayele, Mulat, Tilahun, Befkad Derese, Ngusie, Habtamu Setegn
Published in PloS one (24.01.2025)
Published in PloS one (24.01.2025)
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Journal Article
Short communication: age2exhume – a MATLAB/Python script to calculate steady-state vertical exhumation rates from thermochronometric ages and application to the Himalaya
van der Beek, Peter, Schildgen, Taylor F.
Published in Geochronology (Göttingen. Online) (16.01.2023)
Published in Geochronology (Göttingen. Online) (16.01.2023)
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Journal Article
Screening for Parkinson’s disease using “computer vision”
Kasemsap, Narongrit, Tikkapanyo, Purinat, Wanjantuk, Panupong, Vorasoot, Nisa, Kongbunkiat, Kannikar, Panitchote, Anupol
Published in PloS one (12.08.2025)
Published in PloS one (12.08.2025)
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Journal Article
SP07. A Proposed Prenatal Diagnostic Algorithm for Microtia and Aural Atresia to Improve Early Detection, Parental Preparation, and Patient Outcomes
Sharma, Ishpriya, Mehta, Aashna, Hashemi, Kiana, D'Ambra, Amanda, Hanegan, Cameron, Palacios, Christian, Tahiri, Youssef, Kellogg, Brian C., Pritchett, Cedric, Mitta, Melanie, Taboada, Claudia, Leto Barone, Angelo A.
Published in Plastic and reconstructive surgery. Global open (01.05.2025)
Published in Plastic and reconstructive surgery. Global open (01.05.2025)
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Journal Article
Natural language processing augments comorbidity documentation in neurosurgical inpatient admissions
Sastry, Rahul A., Setty, Aayush, Liu, David D., Zheng, Bryan, Ali, Rohaid, Weil, Robert J., Roye, G. Dean, Doberstein, Curtis E., Oyelese, Adetokunbo A., Niu, Tianyi, Gokaslan, Ziya L., Telfeian, Albert E.
Published in PloS one (09.05.2024)
Published in PloS one (09.05.2024)
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Journal Article
VMseg: Using spatial variance to automatically segment retinal non-perfusion on OCT-angiography
LE BOITE, Hugo, COUTURIER, Aude, TADAYONI, Ramin, LAMARD, Mathieu, QUELLEC, Gwenolé
Published in PloS one (07.08.2024)
Published in PloS one (07.08.2024)
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Journal Article
Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project
Henriques, Rafael Neto, Correia, Marta M., Marrale, Maurizio, Huber, Elizabeth, Kruper, John, Koudoro, Serge, Yeatman, Jason D., Garyfallidis, Eleftherios, Rokem, Ariel
Published in Frontiers in human neuroscience (19.07.2021)
Published in Frontiers in human neuroscience (19.07.2021)
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Journal Article